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Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 395 163

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 26 16

Repositories

Showing 10 of 506 repositories
  • allen-connectomics-glossary Public

    Searchable glossary and table reference for the MICrONS and V1DD EM connectomics datasets, with a printable cheat sheet.

    AllenInstitute/allen-connectomics-glossary's past year of commit activity
    JavaScript 2 1 1 0 Updated Aug 17, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 29 10 282 9 Updated Aug 17, 2026
  • GRNN Public
    AllenInstitute/GRNN's past year of commit activity
    Jupyter Notebook 4 1 0 0 Updated Aug 17, 2026
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis's past year of commit activity
    TypeScript 10 BSD-3-Clause 1 13 13 Updated Aug 17, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 21 BSD-3-Clause 10 69 9 Updated Aug 17, 2026
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    AllenInstitute/neuroglancer's past year of commit activity
    TypeScript 0 Apache-2.0 397 0 1 Updated Aug 17, 2026
  • SPOCTT Public

    Tools, tutorials, and resources associated with the SPOCTT initiative (Scientific and Public Outreach of Cell Type Taxonomies)

    AllenInstitute/SPOCTT's past year of commit activity
    Jupyter Notebook 14 BSD-3-Clause 3 0 0 Updated Aug 17, 2026
  • OCS-Submission-Capsule-API Public
    AllenInstitute/OCS-Submission-Capsule-API's past year of commit activity
    Python 0 0 0 0 Updated Aug 17, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader's past year of commit activity
    Python 9 MIT 1 0 1 Updated Aug 17, 2026
  • arborist Public

    Trees are the most inspiring structures

    AllenInstitute/arborist's past year of commit activity
    Python 0 MIT 1 0 1 Updated Aug 16, 2026
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