A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
-
Updated
Sep 2, 2026 - Go
#
fasta
Here are 591 public repositories matching this topic...
Web-based molecule sketcher
chemistry cheminformatics helm molecule idt fasta smiles amino-acids peptides cdx smarts amino-acid-sequence lifescience nucleotides cml molecule-editor molfile nucleotide-sequence cdxml mdl-molfile
-
Updated
Sep 2, 2026 - TypeScript
Versatile open-source tool for microbiome analysis
search bioinformatics clustering metagenomics chimera fasta microbiome fastq metabarcoding amplicon sequence-alignment
-
Updated
Aug 31, 2026 - C++
A Go package for engineering organisms.
go bioinformatics synthetic-biology computational-biology dna genbank alignment fasta molecular-biology mash synbio bioengineering primer-design golden-gate dna-barcode plasmids dna-barcoding codon-optimizer genetic-engineering sequence-hashing
-
Updated
Aug 1, 2026 - Go
Renderers and renderer extensions for JupyterLab
-
Updated
Mar 4, 2026 - HTML
SeqAn's official repository.
high-performance cpp14 indexing simd alignment bwt fasta blast fastq-format bioinfomatics suffixarray sequence-alignments seqan htslib sam-bam
-
Updated
Aug 11, 2026 - C++
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
bioinformatics modern fasta blast seqan fastq samtools sequence-alignment fm-index sequence-analysis cpp20 cpp-concepts
-
Updated
Aug 31, 2026 - C++
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
snps binary nexus vcf phylogenetics alignment fasta snapp phylip vcf-files polyploid haploid phylogenetic-analysis outgroup convert-snps vcf-format phylip-matrix diploid
-
Updated
Jul 7, 2023 - Python
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
fasta fastq sra data-retrieval nucleic-acids aspera-client fastq-files accession nucleic-acid-sequence sequence-database-search-by-property sra-format
-
Updated
Sep 2, 2026 - Python
Randomly subsample sequencing reads or alignments
rust coverage bioinformatics random alignment fasta bam fastq genome-analysis downsample subsampling
-
Updated
Sep 1, 2026 - Rust
Syntax highlighting for computational biology
syntax-highlighting vim less bioinformatics pdb sublime-text computational-biology gedit vcf fasta bam
-
Updated
Mar 4, 2023 - Shell
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
python bioinformatics jupyter anaconda simulation biology jupyter-notebook dna biopython genbank gel fasta jupyter-notebooks pydna gel-simulation gibson-assembly cloning-strategies gel-electrophoresis assembly-strategies
-
Updated
Aug 24, 2026 - Python
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
python bioinformatics pipeline genomics assembly docker-image polymorphic gap closing fasta scaffolding assembled-contigs genome-assembly paired-end contigs heterozygous mate-pairs
-
Updated
Jul 30, 2026 - C++
Precision genomics for everyone, everywhere. Powered by private AI.
cli open-source machine-learning privacy bioinformatics genomics computational-biology artificial-intelligence fasta biotechnology precision-medicine dna-sequencing on-device regulatory-elements dna-analysis
-
Updated
Aug 31, 2026 - Java
A robust and fast clustering method for amplicon-based studies
-
Updated
Aug 27, 2026 - C++
Add this topic to your repo
To associate your repository with the fasta topic, visit your repo's landing page and select "manage topics."